Chapter 15 Unified Threat Management for FortiOS 5.0 : Other Security Profiles considerations : SSL content scanning and inspection : Exeptions
  
Exeptions
Periodically, you will come across situations were SSL and certificates will interfer with the smooth operation of an application or website. For instance, there is a popular application called Dropbox that does not work when deep SSL inspection is enabled. The reason for this is that the trusted certificate authority that is recognised by Dropbox is imbedded in the software and Dropbox cannot be reconfigured to recognise the FortiGate certificates that are used when deep SSL inspection is implimented.
One way to by-pass the deep inspection for Dropbox is to add dropbox.com to a local category in webfiltering and add that local category to the ftgd-wf-ssl-exempt list in the webfilter profile. This way any connections with dropbox.com will be exempt from deep SSL inspection.
Whenever an exception is found, the reason that it causes an issue will have to be determined in order to figure out a way to accommodate that application or website.