Chapter 15 Unified Threat Management for FortiOS 5.0 : Intrusion protection : Configure IPS options : Configuring fail-open
  
Configuring fail-open
If the IPS engine fails for any reason, it will fail open by default. This applies for inspection of all the protocols inspected by FortiOS IPS protocol decoders, including but not limited to HTTP, HTTPS, FTP, SMTP, POP3, IMAP, etc. This means that traffic continues to flow without IPS scanning. If IPS protection is more important to your network than the uninterrupted flow if network traffic, you can disable this behavior using the fail‑open CLI command:
config ips global
set fail-open {enable | disable}
end
The default setting is enable.