Chapter 10 Install and System Administration for FortiOS 5.0 : VLANs : VLANs in transparent mode
  
VLANs in transparent mode
In transparent mode, the FortiGate unit behaves like a layer-2 bridge but can still provide services such as antivirus scanning, web filtering, spam filtering and intrusion protection to traffic. There are some limitations in transparent mode in that you cannot use SSL VPN, PPTP/L2TP VPN, DHCP server, or easily perform NAT on traffic. The limits in transparent mode apply to IEEE 802.1Q VLAN trunks passing through the unit.
See Also
VLANs and transparent mode
Test the configuration