Chapter 11 IPsec VPN for FortiOS 5.0 : IPv6 Configuration : IPv6 IPsec VPN : Overview of IPv6 IPsec support
  
Overview of IPv6 IPsec support
FortiOS supports route-based IPv6 IPsec, but not policy-based. This section describes how IPv6 IPsec support differs from IPv4 IPsec support.
Where both the gateways and the protected networks use IPv6 addresses, sometimes called IPv6 over IPv6, you can create either an auto-keyed or manually-keyed VPN. You can also combine IPv6 and IPv4 addressing in an auto-keyed VPN in the following ways:
IPv4 over IPv6
The VPN gateways have IPv6 addresses.
The protected networks have IPv4 addresses. The phase 2 configurations at either end use IPv4 selectors.
IPv6 over IPv4
The VPN gateways have IPv4 addresses.
The protected networks use IPv6 addresses. The phase 2 configurations at either end use IPv6 selectors.
Compared with IPv4 IPsec VPN functionality, there are some limitations:
Except for IPv6 over IPv4, remote gateways with Dynamic DNS are not supported.
Selectors cannot be firewall address names. Only IP address, address range and subnet are supported.
Redundant IPv6 tunnels are not supported.