Backing up and restoring the system
Fortinet recommends that you back up and restore your FortiManager configuration to your management PC or central management server on a regular basis to ensure that, should the system fail, you can quickly get the system back to its original state with minimal affect to the network. You should also perform a back up after making any changes to the FortiManager configuration or settings that affect the managed devices.
You can perform backups manually or at scheduled intervals. You can also create a backups - called checkpoints - that define a point where the FortiManager and network management is stable and functioning. Should any future configurations cause issues, you have a point where the system is stable.
Fortinet recommends backing up all configuration settings from your FortiManager unit before upgrading the FortiManager firmware.